Sbalzarini and his team develop theories and methods that help reverse-engineer these “algorithms of life”, focusing on methods for numerical simulations of biological processes and of biological image analysis. Parallel High-Performance Computing for Particle Methods Log in. Home Ivo F Sbalzarini. Agnes Toth-Petroczy (MPI-CBG) Protein plasticity and evolution. , 16:30 - 17:30 Chair for Emerging Electronic Technologies, Investigators & Participating Institutions. We follow a co-design approach where the biological question inspires the development of novel comput. The MOSAIC group does research in Scientific Computing in Imaged-Based Computing Systems Biology. Search Search. POSTPONED: International Seminar & Workshop "Inverse Network Dynamics - Network structure and function from nonlinear dynamics and time series". PROF. IVO SBALZARINI is the Chair of Scientific Computing for Systems Biology on the faculty of computer science of TU Dresden, a professor of mathematics at TU Dresden, and director of the Center for Systems Biology Dresden. We focus on the following methods as required in image-based systems biology: Sbalzarini and his team develop theories and methods that help reverse-engineer these “algorithms of life”, focusing on methods for numerical simulations of biological processes and of biological image analysis. They combine expertise from computer science, mathematics, physics, and biology in order to develop and apply computational methods for the study of spatiotemporal biological processes in 3D. We do not perform own experiments and do not run a wet-lab. Ivo F. Sbalzarini Technische Universität Dresden Faculty of Computer Science Nöthnitzer Str. Skip slideshow. Ivo Sbalzarini from TU Dresden gave this keynote presentation at ISC 2019. Home Ivo F Sbalzarini. Appointments; Date From To Room Instructors; 1: Wed, 3. Send encrypted mail POSTPONED: International Seminar & Workshop "Inverse Network Dynamics - Network structure and function from nonlinear dynamics and time series". To confirm your participation please sign in: http://sonda.wroclaw.pl/forms/wszechnica-miejska, PARTNERS OF THE ACADEMIA EUROPAEA WROCŁAW KNOWLEDGE HUB. Starting 16.30, cfaed researcher Ivo Sbalzarini is going to hold the first talk titled „Scientific Computing in Systems Biology - Unraveling the Algorithms of Life“. Ivo F. Sbalzarini (TU Dresden Chair & MPI-CBG) MOSAIC Group: Scientific computing for image-based systems biology. Ivo F. Sbalzarini founded the MOSAIC Group in April 2006 at ETH Zurich under the name "Computational Biophysics Laboratory (CBL)". He also is a permanent Senior Research Group Leader with the Max Planck Institute of Molecular Cell Biology and Genetics in Dresden. However, we collaborate with numerous experimental groups in order to apply our methods to help advance biology. In 2012, Ivo Sbalzarini moved from ETH Zurich to Dresden, joining a growing group of computational biologists. MOSAIC is organizing the 2018 Dresden Summer School in Systems Biology, hosted by the Center for Systems Biology Dresden. He also is a permanent Senior Research Group Leader with the Max Planck Institute of Molecular Cell Biology and Genetics in Dresden. Cells take decisions based on local communication with neighbors and biochemical information processing. In a nutshell, they build models that take visual data as input and output information. http://sonda.wroclaw.pl/forms/wszechnica-miejska. Ivo Sbalzarini, Carsten Rother , TU Dresden - Faculty of Computer Science, 22.07.2015 (Wednesday) Taken together, they hope to catalyze the next big step for System Biology: uncovering the compute model evolved by nature that enables cells to effortlessly solve NP-hard problems beyond the Bremermann limit. When cells form tissues and embryos develop, they solve hard computational problems. Research Focus; Projects. Particle Methods are therefore the team’s prime algorithmic research area, including supporting by software systems like the PPM Library and the PPML domain-specific language. In 2008, the group changed its name in order to better reflect its activity. This name represents both what we are and what we do: the MOSAIC group combines researchers from several cultural and academic backgrounds in a truly interdisciplinary team that develops, teaches, and applies MOdels, Simulations, and Algorithms for Interdisciplinary Computing. Since 2014, Ivo is the TU-Dresden Chair of Scientific Computing for Systems Biology in the joint Max-Planck/TU-Dresden Center for Systems Biology Dresden(CSBD), and a full professor of computer science on the faculty of TU Dresden. via the SecureMail portal (for TUD external users only). Examples range from understanding images of a 3D scene, over image de-noising, to tracking the spine of a zebrafish. Ivo Sbalzarini 2 Nöthnitzer Str. IVO SBALZARINI GROUP. A tissue hence constitutes a massively parallel non-deterministic computer. They exploit the unifying framework of particle methods for numerical simulation, image analysis, and model identification. Therefore, they develop numerical simulation methods that are designed to the specific intricacies of biological systems, which he will review in his talk. In 2008, the group changed its name in order to better reflect its activity. Algorithms for Black-box Optimization and Sensitivity Analysis. This website uses only third-party cookie files to facilitate the useage of our service. Adaptive Multi-Resolution Simulation Methods Using Particles Click the headline above to see archive of former events. When cells … Moreover, he will show how the unifying framework of Particle Methods allows combined treatment of image-analysis, simulation, and model learning on parallel high-performance computers. Ivo F. Sbalzarini is full Professor on the Faculty of Computer Science of TU Dresden since October 2014, where he holds the Chair of Scientific Computing for Systems Biology in the Center for Systems Biology Dresden … Theory, Algorithms, Software, and the biological Application then co-evolve. Skip slideshow. via the SecureMail portal (for TUD external users only). Click the headline above to see archive of former events. In a group-internal brainstorming the new name "MOSAIC Group" was chosen. In 2012, Ivo and his group moved to Dresden, where he became one of the founding members of the new Max Planck Center for Systems Biology and the TU-Dresden Chair of Scientific Computing for Systems Biology. Ivo F Sbalzarini. Pavel Tomancak (MPI-CBG) Patterns of gene expression in animal development. This requires not only that we understand the molecules and materials of which living systems are composed, but that we understand how they internally function, how they process information, and how all of this is encoded and stored in the genes. The Dresden International PhD Prgram (DIPP) now runs a separate special track in Computational Biology for graduates of computer science, computational science, mathematics, physics, and engineering. He graduated in Mechanical Engineering … A mosaic lives from the synergies between the individually colored tiles. Bio-Image Processing using Particle Methods If you are not blocking these files, you agree to use them and store in memory. While the source code (=genome) and hardware (=molecules) are increasingly known, the algorithms enacted remain elusive. Starting 16.30, cfaed researcher Ivo Sbalzarini is going to hold the first talk titled „Scientific Computing in Systems Biology - Unraveling the Algorithms of Life“. While the source code (=genome) and hardware (=molecules) are increasingly known, the algorithms enacted remain elusive. He graduated in Mechanical Engineering from ETH Zurich in 2002 (Willi Studer Award). TU Dresden, Computer Science Building, Auditorium , Nöthnitzer Straße 46 , 01187 Dresden. In 2006-2012, he was an Assistant Professor of Computational Science with ETH Zurich. We exploit the unifying framework of particle methods for numerical simulation, image analysis, and model identification. Remember that you can manage cookies by changing your browser settings. Ivo F Sbalzarini. Comparing simulation results of hypothetical “algorithms of life” with image-analysis results enables us to refine the former until they match. The second talk titled „Opportunities of Computer Vision and Machine Learning Technology in Dresden“ is going to be held by Carsten Rother. Christoph Weber (MPI-PKS) Mesoscopic Physics of Live. Therefore, they develop numerical simulation methods that are designed to the specific intricacies of biological systems, which he will review in his talk. ABSTRACT: Search for Ivo F Sbalzarini's work. TU Dresden is co-financed by tax funds using the budget approved by the Landtag of the Free State of Saxony. Andreas-Pfitzmann-Bau (APB), room 2002 He is the founder and head of the MOSAIC Group. He also serves as a research avenue leader in the Federal Cluster of Excellence “Physics of Life”, Dean of the International Max Planck Research School in Cell, Developmental, and Systems Biology, Vice-Dean of the Faculty of Computer Science, and he is a member of the board of directors of the CASUS Institute in Görlitz. 46 01187 Dresden Germany ivo.sbalzarinitu-dresden.de + 49 351 210-2525 Prof. Sbalzarini is going to present the key difficulties in this endeavor and discuss the approach scientists take in addressing them in our own research. 46, 01187 website. Dresden, Chair of Scientific Computing for Systems Biology. He completed his doctorate in computer science in 2006 at ETH Zurich (Chorafas Award, Weizmann Institute of Science), where he formed a close collaboration between biology and computer science. In his talk, Sbalzarini mainly discussed the rapidly growing importance and influence in the life sciences for scientific high-performance computing. Cells take decisions based on local communication with neighbors and biochemical information processing. M.Sc.) If we could program plants to only require water when it is available, it would help feed the world’s growing population. The CSBD is an initiative of the Max-Planck Society in collaboration with the Technische Universität Dresden (TUD), one of the eleven German Excellence Universities. Our research is theoretical and computational. The MOSAIC Group does research in scientific computing for image-based systems biology. It was started in 2010 by the Max Planck Institute of Molecular Cell Biology and Genetics (MPI-CBG) and the Max Planck Institute for the Physics of Complex Systems (MPI-PKS) with the generous support of the Saxon State Ministry for Higher Education, Research and the Arts, the BMBF, and the Klaus Tschira Stiftung. Examples range from understanding images of a 3D scene, over image de-noising, to tracking the spine of a zebrafish. IVO SBALZARINI is the Chair of Scientific Computing for Systems Biology on the faculty of computer science of TU Dresden, a professor of mathematics at TU Dresden, and director of the Center for Systems Biology Dresden. In a nutshell, they build models that take visual data as input and output information. degree in mechanical engineering, with majors in control theory and computational science and the Ph.D. degree in computer science from ETH Zurich, Switzerland, in 2002 and 2006, respectively. A concrete biological example from embryo development serves to illustrate the interplay of the disciplines and highlights several advancements in computer science that were required, and are still required, to reach our goal. , 16:30 - 17:30 Since 2012, he is a Senior Research Group Leader with the … Understanding these biological “algorithms” is the goal of the scientific discipline of Systems Biology, which unites computer science and biology. At the same time, Ivo is also a tenured Senior Research Group Leader at the Max Planck Institute of Molecular Cell Biology and Genetics since June 2012, and a faculty member of the School of Science of TU Dresden, in particular the Department of Mathematics since February 2016. Chair for Emerging Electronic Technologies, Investigators & Participating Institutions. Many challenges of the future would lose their horror if we had a better understanding of the inner workings of living systems.